Home > Publications database > Structural Foundations of Potassium Selectivity in Channelrhodopsins > print |
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100 | 1 | _ | |a Govorunova, Elena G. |0 P:(DE-HGF)0 |b 0 |
245 | _ | _ | |a Structural Foundations of Potassium Selectivity in Channelrhodopsins |
260 | _ | _ | |a Washington, DC |c 2022 |b American Society for Microbiology |
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520 | _ | _ | |a Potassium-selective channelrhodopsins (KCRs) are light-gated K+ channels recently found in the stramenopile protist Hyphochytrium catenoides. When expressed in neurons, KCRs enable high-precision optical inhibition of spiking (optogenetic silencing). KCRs are capable of discriminating K+ from Na+ without the conventional K+ selectivity filter found in classical K+ channels. The genome of H. catenoides also encodes a third paralog that is more permeable for Na+ than for K+. To identify structural motifs responsible for the unusual K+ selectivity of KCRs, we systematically analyzed a series of chimeras and mutants of this protein. We found that mutations of three critical residues in the paralog convert its Na+-selective channel into a K+-selective one. Our characterization of homologous proteins from other protists (Colponema vietnamica, Cafeteria burkhardae, and Chromera velia) and metagenomic samples confirmed the importance of these residues for K+ selectivity. We also show that Trp102 and Asp116, conserved in all three H. catenoides paralogs, are necessary, although not sufficient, for K+ selectivity. Our results provide the foundation for further engineering of KCRs for optogenetic needs. |
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700 | 1 | _ | |a Sineshchekov, Oleg A. |0 P:(DE-HGF)0 |b 1 |
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700 | 1 | _ | |a Spudich, John L. |0 P:(DE-HGF)0 |b 4 |e Corresponding author |
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856 | 4 | _ | |u https://juser.fz-juelich.de/record/943338/files/Govorunova_mBio2022.docx |y OpenAccess |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/943338/files/mbio.03039-22.pdf |y OpenAccess |
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999 | C | 5 | |9 -- missing cx lookup -- |a 10.1128/mBio.01656-21 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1126/science.aan5544 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1146/annurev-biochem-101910-144233 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1146/annurev-micro-031721-020452 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1007/978-1-0716-2329-9_1 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1073/pnas.122243399 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1038/s41467-020-19457-7 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1016/j.cub.2020.09.056 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1126/science.aaa7484 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1073/pnas.1936192100 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1038/nn1525 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1038/s41593-022-01094-6 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1016/s0014-5793(03)01104-9 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1016/j.jmb.2021.167002 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1073/pnas.1710702114 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1016/j.cell.2022.01.007 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1038/s41467-022-32441-7 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1038/257028a0 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1038/nature10870 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.7554/eLife.41741 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1098/rsob.170184 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.3389/fnmol.2022.976910 |2 Crossref |
999 | C | 5 | |1 Hille B |y 2001 |2 Crossref |u Hille B. 2001. Ion channels of excitable membranes. Sinauer Associates, Sunderland, MA. |t Ion channels of excitable membranes. |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1371/journal.pone.0050018 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1101/2022.07.02.498568 |2 Crossref |u Vierock J Peter E Grimm C Rozenberg A Castro Scalise AG Augustin S Tanese D Forget BC Emiliani V Béjà O Hegemann P. 2022. WiChR a highly potassium selective channelrhodopsin for low-light two-photon neuronal inhibition. bioRxiv. doi:10.1101/2022.07.02.498568. |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1073/pnas.87.3.1018 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1093/nar/gkm276 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1371/journal.pone.0095467 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1038/nature06635 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1016/j.bpj.2013.01.002 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1038/s43586-022-00136-4 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1038/s41591-021-01351-4 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1016/j.febslet.2013.08.043 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1002/anie.201301698 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1016/j.jmb.2014.11.004 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.7554/eLife.65903 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1021/bi00206a001 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1126/science.1249375 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1016/j.bpj.2019.04.001 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1128/mBio.00657-20 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1126/science.8378771 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1073/pnas.86.23.9228 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1126/science.1072068 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1038/s41594-022-00783-x |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1093/nar/gky376 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1093/nar/gkac420 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1038/s41467-017-02342-1 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1101/2020.10.15.341214 |2 Crossref |u Delmont TO Gaia M Hinsinger DD Fremont P Vanni C Guerra AF Eren AM Kourlaiev A d’Agata L Clayssen Q Villar E Labadie K Cruaud C Poulain J Da Silva C Wessner M Noel B Aury J-M de Vargas C Bowler C Karsenti E Pelletier E Wincker P Jaillon O. 2021. Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics. bioRxiv. doi:10.1101/2020.10.15.341214. |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1093/nar/gkaa939 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1093/nar/gkaa898 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.7554/eLife.06974 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1101/2022.04.08.487609 |2 Crossref |u Hallgren J Tsirigos KD Pedersen MD Almagro Armenteros JJ Marcatili P Nielsen H Krogh A Winther O. 2022. DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks. bioRxiv. doi:10.1101/2022.04.08.487609. |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1093/molbev/msaa015 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1038/s41592-022-01488-1 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1107/S1399004715015722 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1002/jcc.540040211 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1021/jp973084f |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1002/jcc.20065 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1063/1.445869 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1016/S0006-3495(95)80184-0 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1016/S0006-3495(00)76626-4 |2 Crossref |
999 | C | 5 | |9 -- missing cx lookup -- |a 10.1016/j.str.2005.01.021 |2 Crossref |
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