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@ARTICLE{Gui:996752,
      author       = {Gui, Songtao and Martinez-Rivas, Felix Juan and Wen, Weiwei
                      and Meng, Minghui and Yan, Jianbing and Usadel, Björn and
                      Fernie, Alisdair R.},
      title        = {{G}oing broad and deep: sequencing‐driven insights into
                      plant physiology, evolution, and crop domestication},
      journal      = {The plant journal},
      volume       = {113},
      number       = {3},
      issn         = {0960-7412},
      address      = {Oxford [u.a.]},
      publisher    = {Wiley-Blackwell},
      reportid     = {FZJ-2023-01161},
      pages        = {446 - 459},
      year         = {2023},
      abstract     = {Deep sequencing is a term that has become embedded in the
                      plant genomic literature in recent years and with good
                      reason. A torrent of (largely) high-quality genomic and
                      transcriptomic data has been collected and most of this has
                      been publicly released. Indeed, almost 1000 plant genomes
                      have been reported (www.plabipd.de) and the 2000 Plant
                      Transcriptomes Project has long been completed. The
                      EarthBioGenome project will dwarf even these milestones.
                      That said, massive progress in understanding plant
                      physiology, evolution, and crop domestication has been made
                      by sequencing broadly (across a species) as well as deeply
                      (within a single individual). We will outline the current
                      state of the art in genome and transcriptome sequencing
                      before we briefly review the most visible of these broad
                      approaches, namely genome-wide association and
                      transcriptome-wide association studies, as well as the
                      compilation of pangenomes. This will include both (i) the
                      most commonly used methods reliant on single nucleotide
                      polymorphisms and short InDels and (ii) more recent examples
                      which consider structural variants. We will subsequently
                      present case studies exemplifying how their application has
                      brought insight into either plant physiology or evolution
                      and crop domestication. Finally, we will provide conclusions
                      and an outlook as to the perspective for the extension of
                      such approaches to different species, tissues, and
                      biological processes.},
      cin          = {IBG-4},
      ddc          = {580},
      cid          = {I:(DE-Juel1)IBG-4-20200403},
      pnm          = {2171 - Biological and environmental resources for
                      sustainable use (POF4-217)},
      pid          = {G:(DE-HGF)POF4-2171},
      typ          = {PUB:(DE-HGF)16},
      pubmed       = {36534120},
      UT           = {WOS:000908051500001},
      doi          = {10.1111/tpj.16070},
      url          = {https://juser.fz-juelich.de/record/996752},
}