# Vita Publications

 2017-11-2214:58 [FZJ-2017-07677] Journal Article et al Computational genomics-proteomics and Phylogeny analysis of twenty one mycobacterial genomes (Tuberculosis & non Tuberculosis strains) The genus Mycobacterium comprises different species, among them the most contagious and infectious bacteria. The members of the complex Mycobacterium tuberculosis are the most virulent microorganisms that have killed human and other mammals since millennia. [...] External link: Fulltext 2017-11-2214:55 [FZJ-2017-07675] Journal Article Misbah, C. Vesicle dynamics under weak flows: Application to large excess area Physical review / E 85(6), 061922 (2012) [10.1103/PhysRevE.85.061922] Dynamics of a vesicle under simple shear flow is studied in the limit of small capillary number. A perturbative approach is used to derive the equation of vesicle dynamics. [...] External link: Fulltext 2017-11-2213:13 [FZJ-2017-07657] Journal Article et al Vesicle dynamics in a confined Poiseuille flow: From steady state to chaos Physical review / E 90(3), 033011 (2014) [10.1103/PhysRevE.90.033011] Red blood cells (RBCs) are the major component of blood, and the flow of blood is dictated by that of RBCs. We employ vesicles, which consist of closed bilayer membranes enclosing a fluid, as a model system to study the behavior of RBCs under a confined Poiseuille flow. [...] External link: Fulltext 2017-11-2213:11 [FZJ-2017-07656] Journal Article et al The plasma protein fibrinogen stabilizes clusters of red blood cells in microcapillary flows Scientific reports 4(1), 4348 (2015) [10.1038/srep04348] The supply of oxygen and nutrients and the disposal of metabolic waste in the organs depend strongly on how blood, especially red blood cells, flow through the microvascular network. Macromolecular plasma proteins such as fibrinogen cause red blood cells to form large aggregates, called rouleaux, which are usually assumed to be disaggregated in the circulation due to the shear forces present in bulk flow. [...] External link: Fulltext 2017-11-1713:25 [FZJ-2017-07576] Journal Article et al Beyond sixfold coordinated Si in SiO$_{2}$ glass at ultrahigh pressures Proceedings of the National Academy of Sciences of the United States of America 114(38), 10041 - 10046 (2017) [10.1073/pnas.1708882114] 2017-10-1609:56 [FZJ-2017-07005] Contribution to a conference proceedings/Contribution to a book Balaji, P. A Performance Study of UCX over InfiniBand 2017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID) : [Proceedings] - IEEE, 2017. - ISBN 978-1-5090-6611-7 - doi:10.1109/CCGRID.2017.1492017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), Meeting locationMadrid, Spain, 14 May 2017 - 17 May 2017 IEEE, (2017) [10.1109/CCGRID.2017.149] 2017-10-1609:53 [FZJ-2017-07004] Contribution to a conference proceedings/Contribution to a book Froning, H. Energy-Efficient Stencil Computations on Distributed GPUs Using Dynamic Parallelism and GPU-Controlled Communication 2014 Energy Efficient Supercomputing Workshop : [Proceedings] - IEEE, 2014. - ISBN 978-1-4799-7036-0 - doi:10.1109/E2SC.2014.142014 Energy Efficient Supercomputing Workshop (E2SC), Meeting locationNew Orleans, LA, 16 Nov 2014 - 16 Nov 2014 IEEE, (2014) [10.1109/E2SC.2014.14] 2017-10-1609:52 [FZJ-2017-07003] Journal Article Froning, H. Analyzing communication models for distributed thread-collaborative processors in terms of energy and time 2015 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS), Meeting locationPhiladelphia, PA, 29 Mar 2015 - 31 Mar 2015 IEEE, (2015) [10.1109/ISPASS.2015.7095817] 2017-10-1609:51 [FZJ-2017-07002] Dissertation / PhD Thesis Oden, L. Direct Communication Methods for Distributed GPUs Heidelberg University Library, (2015) [10.11588/heidok.00018623] = Heidelberg, Diss., 2015 Today, GPUs and other parallel accelerators are widely used in high performance computing, due to their high computational power and high performance per watt. Still, one of the main bottlenecks of GPU-accelerated cluster computing is the data transfer between distributed GPUs. [...] External link: Fulltext 2017-10-1609:41 [FZJ-2017-06997] Journal Article Fröning, H. InfiniBand Verbs on GPU: a case study of controlling an InfiniBand network device from the GPU