Contribution to a conference proceedings/Contribution to a book FZJ-2024-03256

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Scaling Computational Fluid Dynamics: In Situ Visualization of NekRS using SENSEI

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2023
Association for Computing Machinery New York, USA
ISBN: 9798400707858

Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, Network, Storage, and Analysis - ACM New York, NY, USA, 2023
Workshops of The International Conference on High Performance Computing, Network, Storage, and Analysis, SC-W 2023, Denver, CODenver, CO, USA, 12 Nov 2023 - 17 Nov 20232023-11-122023-11-17
New York, USA : Association for Computing Machinery 862–867 () [10.1145/3624062.3624159]

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Abstract: In the realm of Computational Fluid Dynamics (CFD), the demand for memory and computation resources is extreme, necessitating the use of leadership-scale computing platforms for practical domain sizes. This intensive requirement renders traditional checkpointing methods ineffective due to the significant slowdown in simulations while saving state data to disk. As we progress towards exascale and GPU-driven High-Performance Computing (HPC) and confront larger problem sizes, the choice becomes increasingly stark: to compromise data fidelity or to reduce resolution. To navigate this challenge, this study advocates for the use of in situ analysis and visualization techniques. These allow more frequent data "snapshots" to be taken directly from memory, thus avoiding the need for disruptive checkpointing. We detail our approach of instrumenting NekRS, a GPU-focused thermal-fluid simulation code employing the spectral element method (SEM), and describe varied in situ and in transit strategies for data rendering. Additionally, we provide concrete scientific use-cases and report on runs performed on Polaris, Argonne Leadership Computing Facility’s (ALCF) 44 Petaflop supercomputer and Jülich Wizard for European Leadership Science (JUWELS) Booster, Jülich Supercomputing Centre’s (JSC) 71 Petaflop High Performance Computing (HPC) system, offering practical insight into the implications of our methodology.


Contributing Institute(s):
  1. Jülich Supercomputing Center (JSC)
Research Program(s):
  1. 5112 - Cross-Domain Algorithms, Tools, Methods Labs (ATMLs) and Research Groups (POF4-511) (POF4-511)
  2. CoEC - Center of Excellence in Combustion (952181) (952181)

Appears in the scientific report 2024
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 Record created 2024-04-29, last modified 2025-02-03


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