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@ARTICLE{Bolger:280660,
      author       = {Bolger, A. M. and Lohse, M. and Usadel, Björn},
      title        = {{T}rimmomatic: a flexible trimmer for {I}llumina sequence
                      data},
      journal      = {Bioinformatics},
      volume       = {30},
      number       = {15},
      issn         = {1460-2059},
      address      = {Oxford},
      publisher    = {Oxford Univ. Press},
      reportid     = {FZJ-2016-00423},
      pages        = {2114 - 2120},
      year         = {2014},
      abstract     = {Motivation: Although many next-generation sequencing (NGS)
                      read preprocessing tools already existed, we could not find
                      any tool or combination of tools that met our requirements
                      in terms of flexibility, correct handling of paired-end data
                      and high performance. We have developed Trimmomatic as a
                      more flexible and efficient preprocessing tool, which could
                      correctly handle paired-end data.Results: The value of NGS
                      read preprocessing is demonstrated for both reference-based
                      and reference-free tasks. Trimmomatic is shown to produce
                      output that is at least competitive with, and in many cases
                      superior to, that produced by other tools, in all scenarios
                      tested.},
      cin          = {IBG-2},
      ddc          = {004},
      cid          = {I:(DE-Juel1)IBG-2-20101118},
      pnm          = {582 - Plant Science (POF3-582)},
      pid          = {G:(DE-HGF)POF3-582},
      typ          = {PUB:(DE-HGF)16},
      UT           = {WOS:000340049100004},
      pubmed       = {pmid:24695404},
      doi          = {10.1093/bioinformatics/btu170},
      url          = {https://juser.fz-juelich.de/record/280660},
}