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@ARTICLE{Bolger:826298,
author = {Bolger, Marie and Arsova, Borjana and Usadel, Björn},
title = {{P}lant genome and transcriptome annotations: from
misconceptions to simple solutions},
journal = {Briefings in bioinformatics},
volume = {bbw135},
issn = {1477-4054},
address = {Oxford [u.a.]},
publisher = {Oxford University Press},
reportid = {FZJ-2017-00531},
pages = {1-13},
year = {2017},
abstract = {Next-generation sequencing has triggered an explosion of
available genomic and transcriptomic resources in the plant
sciences. Although genome and transcriptome sequencing has
become orders of magnitudes cheaper and more efficient,
often the functional annotation process is lagging behind.
This might be hampered by the lack of a comprehensive
enumeration of simple-to-use tools available to the plant
researcher. In this comprehensive review, we present (i)
typical ontologies to be used in the plant sciences, (ii)
useful databases and resources used for functional
annotation, (iii) what to expect from an annotated plant
genome, (iv) an automated annotation pipeline and (v) a
recipe and reference chart outlining typical steps used to
annotate plant genomes/transcriptomes using publicly
available resources.},
cin = {IBG-2},
ddc = {570},
cid = {I:(DE-Juel1)IBG-2-20101118},
pnm = {583 - Innovative Synergisms (POF3-583)},
pid = {G:(DE-HGF)POF3-583},
typ = {PUB:(DE-HGF)16},
pubmed = {pmid:28062412},
UT = {WOS:000432676200007},
doi = {10.1093/bib/bbw135},
url = {https://juser.fz-juelich.de/record/826298},
}