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@ARTICLE{Bolger:826298,
      author       = {Bolger, Marie and Arsova, Borjana and Usadel, Björn},
      title        = {{P}lant genome and transcriptome annotations: from
                      misconceptions to simple solutions},
      journal      = {Briefings in bioinformatics},
      volume       = {bbw135},
      issn         = {1477-4054},
      address      = {Oxford [u.a.]},
      publisher    = {Oxford University Press},
      reportid     = {FZJ-2017-00531},
      pages        = {1-13},
      year         = {2017},
      abstract     = {Next-generation sequencing has triggered an explosion of
                      available genomic and transcriptomic resources in the plant
                      sciences. Although genome and transcriptome sequencing has
                      become orders of magnitudes cheaper and more efficient,
                      often the functional annotation process is lagging behind.
                      This might be hampered by the lack of a comprehensive
                      enumeration of simple-to-use tools available to the plant
                      researcher. In this comprehensive review, we present (i)
                      typical ontologies to be used in the plant sciences, (ii)
                      useful databases and resources used for functional
                      annotation, (iii) what to expect from an annotated plant
                      genome, (iv) an automated annotation pipeline and (v) a
                      recipe and reference chart outlining typical steps used to
                      annotate plant genomes/transcriptomes using publicly
                      available resources.},
      cin          = {IBG-2},
      ddc          = {570},
      cid          = {I:(DE-Juel1)IBG-2-20101118},
      pnm          = {583 - Innovative Synergisms (POF3-583)},
      pid          = {G:(DE-HGF)POF3-583},
      typ          = {PUB:(DE-HGF)16},
      pubmed       = {pmid:28062412},
      UT           = {WOS:000432676200007},
      doi          = {10.1093/bib/bbw135},
      url          = {https://juser.fz-juelich.de/record/826298},
}