Journal Article

FZJ-2017-00531

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Plant genome and transcriptome annotations: from misconceptions to simple solutions

Bolger, M.FZJ* ; Arsova, B.FZJ* ; Usadel, B. (Corresponding author)FZJ*

2017
Oxford University Press Oxford [u.a.]

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Please use a persistent id in citations: http://hdl.handle.net/2128/13653  doi:10.1093/bib/bbw135

Abstract: Next-generation sequencing has triggered an explosion of available genomic and transcriptomic resources in the plant sciences. Although genome and transcriptome sequencing has become orders of magnitudes cheaper and more efficient, often the functional annotation process is lagging behind. This might be hampered by the lack of a comprehensive enumeration of simple-to-use tools available to the plant researcher. In this comprehensive review, we present (i) typical ontologies to be used in the plant sciences, (ii) useful databases and resources used for functional annotation, (iii) what to expect from an annotated plant genome, (iv) an automated annotation pipeline and (v) a recipe and reference chart outlining typical steps used to annotate plant genomes/transcriptomes using publicly available resources.

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Contributing Institute(s):

1. Pflanzenwissenschaften (IBG-2)

Research Program(s):

1. 583 - Innovative Synergisms (POF3-583) (POF3-583)

Appears in the scientific report 2017

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Database coverage:
; ; ; Allianz-Lizenz / DFG ; BIOSIS Previews ; Current Contents - Life Sciences ; Ebsco Academic Search ; IF >= 5 ; JCR ; NCBI Molecular Biology Database ; SCOPUS ; Science Citation Index Expanded ; Thomson Reuters Master Journal List ; Web of Science Core Collection

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