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@ARTICLE{Hu:837919,
author = {Hu, Ruibo and Xu, Yan and Yu, Changjiang and He, Kang and
Tang, Qi and Jia, Chunlin and He, Guo and Wang, Xiaoyu and
Kong, Yingzhen and Zhou, Gongke},
title = {{T}ranscriptome analysis of genes involved in secondary
cell wall biosynthesis in developing internodes of
{M}iscanthus lutarioriparius},
journal = {Scientific reports},
volume = {7},
number = {1},
issn = {2045-2322},
address = {London},
publisher = {Nature Publishing Group},
reportid = {FZJ-2017-06689},
pages = {9034},
year = {2017},
abstract = {Miscanthus is a promising lignocellulosic bioenergy crop
for bioethanol production. To identify candidate genes and
regulation networks involved in secondary cell wall (SCW)
development in Miscanthus, we performed de novo
transcriptome analysis of a developing internode. According
to the histological and in-situ histochemical analysis, an
elongating internode of M. lutarioriparius can be divided
into three distinct segments, the upper internode (UI),
middle internode (MI) and basal internode (BI), each
representing a different stage of SCW development. The
transcriptome analysis generated approximately 300 million
clean reads, which were de novo assembled into 79,705
unigenes. Nearly $65\%$ of unigenes was annotated in seven
public databases. Comparative profiling among the UI, MI and
BI revealed four distinct clusters. Moreover, detailed
expression profiling was analyzed for gene families and
transcription factors (TFs) involved in SCW biosynthesis,
assembly and modification. Based on the co-expression
patterns, putative regulatory networks between TFs and
SCW-associated genes were constructed. The work provided the
first transcriptome analysis of SCW development in M.
lutarioriparius. The results obtained provide novel insights
into the biosynthesis and regulation of SCW in Miscanthus.
In addition, the genes identified represent good candidates
for further functional studies to unravel their roles in SCW
biosynthesis and modification.},
cin = {ER-C-1},
ddc = {000},
cid = {I:(DE-Juel1)ER-C-1-20170209},
pnm = {143 - Controlling Configuration-Based Phenomena (POF3-143)},
pid = {G:(DE-HGF)POF3-143},
typ = {PUB:(DE-HGF)16},
pubmed = {pmid:28831170},
UT = {WOS:000408279500002},
doi = {10.1038/s41598-017-08690-8},
url = {https://juser.fz-juelich.de/record/837919},
}