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@ARTICLE{Hu:837919,
      author       = {Hu, Ruibo and Xu, Yan and Yu, Changjiang and He, Kang and
                      Tang, Qi and Jia, Chunlin and He, Guo and Wang, Xiaoyu and
                      Kong, Yingzhen and Zhou, Gongke},
      title        = {{T}ranscriptome analysis of genes involved in secondary
                      cell wall biosynthesis in developing internodes of
                      {M}iscanthus lutarioriparius},
      journal      = {Scientific reports},
      volume       = {7},
      number       = {1},
      issn         = {2045-2322},
      address      = {London},
      publisher    = {Nature Publishing Group},
      reportid     = {FZJ-2017-06689},
      pages        = {9034},
      year         = {2017},
      abstract     = {Miscanthus is a promising lignocellulosic bioenergy crop
                      for bioethanol production. To identify candidate genes and
                      regulation networks involved in secondary cell wall (SCW)
                      development in Miscanthus, we performed de novo
                      transcriptome analysis of a developing internode. According
                      to the histological and in-situ histochemical analysis, an
                      elongating internode of M. lutarioriparius can be divided
                      into three distinct segments, the upper internode (UI),
                      middle internode (MI) and basal internode (BI), each
                      representing a different stage of SCW development. The
                      transcriptome analysis generated approximately 300 million
                      clean reads, which were de novo assembled into 79,705
                      unigenes. Nearly $65\%$ of unigenes was annotated in seven
                      public databases. Comparative profiling among the UI, MI and
                      BI revealed four distinct clusters. Moreover, detailed
                      expression profiling was analyzed for gene families and
                      transcription factors (TFs) involved in SCW biosynthesis,
                      assembly and modification. Based on the co-expression
                      patterns, putative regulatory networks between TFs and
                      SCW-associated genes were constructed. The work provided the
                      first transcriptome analysis of SCW development in M.
                      lutarioriparius. The results obtained provide novel insights
                      into the biosynthesis and regulation of SCW in Miscanthus.
                      In addition, the genes identified represent good candidates
                      for further functional studies to unravel their roles in SCW
                      biosynthesis and modification.},
      cin          = {ER-C-1},
      ddc          = {000},
      cid          = {I:(DE-Juel1)ER-C-1-20170209},
      pnm          = {143 - Controlling Configuration-Based Phenomena (POF3-143)},
      pid          = {G:(DE-HGF)POF3-143},
      typ          = {PUB:(DE-HGF)16},
      pubmed       = {pmid:28831170},
      UT           = {WOS:000408279500002},
      doi          = {10.1038/s41598-017-08690-8},
      url          = {https://juser.fz-juelich.de/record/837919},
}