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@ARTICLE{Balacescu:872562,
author = {Balacescu, Livia and Schrader, Tobias E. and Radulescu,
Aurel and Zolnierczuk, Piotr and Holderer, Olaf and Pasini,
Stefano and Fitter, Jörg and Stadler, Andreas M.},
title = {{T}ransition between protein-like and polymer-like dynamic
behavior: {I}nternal friction in unfolded apomyoglobin
depends on denaturing conditions},
journal = {Scientific reports},
volume = {10},
number = {1},
issn = {2045-2322},
address = {[London]},
publisher = {Macmillan Publishers Limited, part of Springer Nature},
reportid = {FZJ-2020-00068},
pages = {1570},
year = {2020},
abstract = {Equilibrium dynamics of different folding intermediates and
denatured states is strongly connected to the exploration of
the conformational space on the nanosecond time scale and
might have implications in understanding protein folding.
For the first time, the same protein system apomyoglobin has
been investigated using neutron spin-echo spectroscopy in
different states: native-like, partially folded (molten
globule) and completely unfolded, following two different
unfolding paths: using acid or guanidinium chloride (GdmCl).
While the internal dynamics of the native-like state can be
understood using normal mode analysis based on high
resolution structural information of myoglobin, for the
unfolded and even for the molten globule states, models from
polymer science are employed. The Zimm model accurately
describes the slowly-relaxing, expanded GdmCl-denaturated
state, ignoring the individuality of the different aminoacid
side chain. The dynamics of the acid unfolded and molten
globule state are similar in the framework of the Zimm model
with internal friction, where the chains still interact and
hinder each other: the first Zimm relaxation time is as
large as the internal friction time. Transient formation of
secondary structure elements in the acid unfolded and
presence of α-helices in the molten globule state lead to
internal friction to a similar extent.},
cin = {JCNS-FRM-II / ICS-5 / JCNS-1 / JCNS-SNS},
ddc = {600},
cid = {I:(DE-Juel1)JCNS-FRM-II-20110218 /
I:(DE-Juel1)ICS-5-20110106 / I:(DE-Juel1)JCNS-1-20110106 /
I:(DE-Juel1)JCNS-SNS-20110128},
pnm = {551 - Functional Macromolecules and Complexes (POF3-551)},
pid = {G:(DE-HGF)POF3-551},
experiment = {EXP:(DE-MLZ)KWS2-20140101 / EXP:(DE-MLZ)J-NSE-20140101},
typ = {PUB:(DE-HGF)16},
pubmed = {pmid:32005832},
UT = {WOS:000562877200006},
doi = {10.1038/s41598-020-57775-4},
url = {https://juser.fz-juelich.de/record/872562},
}