Journal Article

FZJ-2020-02160

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Enabling reusability of plant phenomic datasets with MIAPPE 1.1

Papoutsoglou, E. A. (Corresponding author) ; Faria, D. ; Arend, D. ; Arnaud, E. ; Athanasiadis, I. N. ; Chaves, I. ; Coppens, F. ; Cornut, G. ; Costa, B. V. ; Ćwiek‐Kupczyńska, H. ; Droesbeke, B. ; Finkers, R. ; Gruden, K. ; Junker, A. ; King, G. J. ; Krajewski, P. ; Lange, M. ; Laporte, M. ; Michotey, C. ; Oppermann, M. ; Ostler, R. ; Poorter, H.FZJ* ; Ramı́rez‐Gonzalez, R. ; Ramšak, Ž. ; Reif, J. C. ; Rocca‐Serra, P. ; Sansone, S. ; Scholz, U. ; Tardieu, F. ; Uauy, C. ; Usadel, B.FZJ* ; Visser, R. G. F. ; Weise, S. ; Kersey, P. J. ; Miguel, C. M. ; Adam‐Blondon, A. ; Pommier, C.

2020
Wiley-Blackwell Oxford [u.a.]

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Please use a persistent id in citations: http://hdl.handle.net/2128/25132  doi:10.1111/nph.16544

Abstract: Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardising data publication practices. This is particularly challenging in the plant phenotyping domain, due to its complexity and heterogeneity. We have produced the MIAPPE 1.1 release, which enhances the existing MIAPPE standard in coverage, to support perennial plants, in structure, through an explicit data model, and in clarity, through definitions and examples. We evaluated MIAPPE 1.1 by using it to express several heterogeneous phenotyping experiments in a range of different formats, to demonstrate its applicability and the interoperability between the various implementations. Furthermore, the extended coverage is demonstrated by the fact that one of the datasets could not have been described under MIAPPE 1.0. MIAPPE 1.1 marks a major step towards enabling plant phenotyping data reusability, thanks to its extended coverage, and especially the formalisation of its data model, which facilitates its implementation in different formats. Community feedback has been critical to this development, and will be a key part of ensuring adoption of the standard.

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Contributing Institute(s):

1. Bioinformatik (IBG-4)
2. Pflanzenwissenschaften (IBG-2)

Research Program(s):

1. 582 - Plant Science (POF3-582) (POF3-582)
2. 583 - Innovative Synergisms (POF3-583) (POF3-583)

Appears in the scientific report 2020

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Database coverage:
; ; ; BIOSIS Previews ; Biological Abstracts ; Clarivate Analytics Master Journal List ; Current Contents - Agriculture, Biology and Environmental Sciences ; DEAL Wiley ; Ebsco Academic Search ; Essential Science Indicators ; IF >= 5 ; JCR ; NCBI Molecular Biology Database ; National-Konsortium ; SCOPUS ; Science Citation Index ; Science Citation Index Expanded ; Web of Science Core Collection

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