Preprint

FZJ-2021-01214

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Brain Modelling as a Service: The Virtual Brain on EBRAINS

Schirner, M. ; Domide, L. ; Perdikis, D. ; Triebkorn, P. ; Stefanovski, L. ; Pai, R. ; Popa, P. ; Valean, B. ; Palmer, J. ; Langford, C. ; Blickensdörfer, A. ; van der Vlag, M.FZJ* ; Diaz, S.FZJ* ; Peyser, A.FZJ* ; Klijn, W.FZJ* ; Pleiter, D.FZJ* ; Nahm, A.FZJ* ; Schmid, O. ; Woodman, M. ; Zehl, L.FZJ* ; Fousek, J. ; Petkoski, S. ; Kusch, L. ; Hashemi, M. ; Marinazzo, D. ; Mangin, J.-F. ; Flöel, A. ; Akintoye, S. ; Stahl, B. C. ; Cepic, M. ; Johnson, E. ; McIntosh, A. R. ; Hilgetag, C. C. ; Morgan, M. ; Schuller, B.FZJ* ; Upton, A. ; McMurtrie, C. ; Dickscheid, T.FZJ* ; Bjaalie, J. G. ; Amunts, K.FZJ* ; Mersmann, J. ; Jirsa, V. ; Ritter, P. (Corresponding author)

2021

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Please use a persistent id in citations: http://hdl.handle.net/2128/27287

Abstract: The Virtual Brain (TVB) is now available as open-source cloud ecosystem on EBRAINS, a shared digital research platform for brain science. It offers services for constructing, simulating and analysing brain network models (BNMs) including the TVB network simulator; magnetic resonance imaging (MRI) processing pipelines to extract structural and functional connectomes; multiscale co-simulation of spiking and large-scale networks; a domain specific language for automatic high-performance code generation from user-specified models; simulation-ready BNMs of patients and healthy volunteers; Bayesian inference of epilepsy spread; data and code for mouse brain simulation; and extensive educational material. TVB cloud services facilitate reproducible online collaboration and discovery of data assets, models, and software embedded in scalable and secure workflows, a precondition for research on large cohort data sets, better generalizability and clinical translation.

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Contributing Institute(s):

1. Strukturelle und funktionelle Organisation des Gehirns (INM-1)
2. Jülich Supercomputing Center (JSC)

Research Program(s):

1. 525 - Decoding Brain Organization and Dysfunction (POF4-525) (POF4-525)
2. 511 - Enabling Computational- & Data-Intensive Science and Engineering (POF4-511) (POF4-511)
3. 512 - Supercomputing & Big Data Infrastructures (POF4-512) (POF4-512)
4. HBP SGA2 - Human Brain Project Specific Grant Agreement 2 (785907) (785907)
5. HBP SGA3 - Human Brain Project Specific Grant Agreement 3 (945539) (945539)

Appears in the scientific report 2021

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Database coverage:
; ; BIOSIS Previews ; Current Contents - Life Sciences ; Ebsco Academic Search ; IF < 5 ; JCR ; NCBI Molecular Biology Database ; SCOPUS ; Science Citation Index Expanded ; Thomson Reuters Master Journal List ; Web of Science Core Collection ; Zoological Record

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