Software FZJ-2022-02126

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ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations

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2022

Abstract: Choosing the optimal solver for systems of ordinary differential equations (ODEs) is a critical step in dynamical systems simulation. ODE-toolbox is a Python package that assists in solver benchmarking, and recommends solvers on the basis of a set of user-configurable heuristics. For all dynamical equations that admit an analytic solution, ODE-toolbox generates propagator matrices that allow the solution to be calculated at machine precision. For all others, first-order update expressions are returned based on the Jacobian matrix.In addition to continuous dynamics, discrete events can be used to model instantaneous changes in system state, such as a neuronal action potential. These can be generated by the system under test, as well as applied as external stimuli, making ODE-toolbox particularly well-suited for applications in computational neuroscience.


Contributing Institute(s):
  1. Jülich Supercomputing Center (JSC)
  2. Computational and Systems Neuroscience (INM-6)
  3. Theoretical Neuroscience (IAS-6)
  4. Jara-Institut Brain structure-function relationships (INM-10)
Research Program(s):
  1. 5111 - Domain-Specific Simulation & Data Life Cycle Labs (SDLs) and Research Groups (POF4-511) (POF4-511)
  2. 5234 - Emerging NC Architectures (POF4-523) (POF4-523)
  3. 5235 - Digitization of Neuroscience and User-Community Building (POF4-523) (POF4-523)
  4. 5232 - Computational Principles (POF4-523) (POF4-523)
  5. HBP SGA1 - Human Brain Project Specific Grant Agreement 1 (720270) (720270)
  6. HBP SGA2 - Human Brain Project Specific Grant Agreement 2 (785907) (785907)
  7. HBP SGA3 - Human Brain Project Specific Grant Agreement 3 (945539) (945539)
  8. SLNS - SimLab Neuroscience (Helmholtz-SLNS) (Helmholtz-SLNS)
  9. PhD no Grant - Doktorand ohne besondere Förderung (PHD-NO-GRANT-20170405) (PHD-NO-GRANT-20170405)

Appears in the scientific report 2022
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The record appears in these collections:
Dokumenttypen > Andere > Software
Institutssammlungen > INM > INM-10
Institutssammlungen > IAS > IAS-6
Institutssammlungen > INM > INM-6
Workflowsammlungen > Öffentliche Einträge
Institutssammlungen > JSC
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 Datensatz erzeugt am 2022-05-10, letzte Änderung am 2024-03-13


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