CompBioMed

A Centre of Excellence in Computational Biomedicine

CoordinatorUniversity of Sheffield ; LIFETEC GROUP BV ; THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD ; Edinburgh Napier University ; CBK SCI CON LIMITED ; ACELLERA LABS SL ; EVOTEC AG* ; University of London - University College London ; JANSSEN PHARMACEUTICA NV ; Reprotec UK Limited ; BULL SAS ; SURFSARA BV ; University of Geneva ; Pompeu Fabra University ; BARCELONA SUPERCOMPUTING CENTER - CENTRO NACIONAL DE SUPERCOMPUTACION ; VU University Amsterdam
Grant period2016-10-01 - 2019-09-30
Funding bodyEuropean Union
Call numberH2020-EINFRA-2015-1
Grant number675451
IdentifierG:(EU-Grant)675451

Note: This Centre of Excellence will advance the role of computationally based modelling and simulation within biomedicine. Three related user communities lie at the heart of the CoE: academic, industrial and clinical researchers who all wish to build, develop and extend such capabilities in line with the increasing power of high performance computers. Three distinct exemplar research areas will be pursued: cardiovascular, molecularly-based and neuro-musculoskeletal medicine. Predictive computational biomedicine involves applications that are comprised of multiple components, arranged as far as possible into automated workflows in which data is taken, from an individual patient, processed, and combined into a model which produces predicted health outcomes. Many of the models are multiscale, requiring the coupling of two or more high performance codes. Computational biomedicine holds out the prospect of predicting the effect of personalised medical treatments and interventions ahead of carrying them out, with all the ensuing benefits. Indeed, in some cases, it is already doing so today. The CoE presents a powerful consortium of partners and has an outward facing nature and will actively train, disseminate and engage with these user communities across Europe and beyond. Because this field is new and growing rapidly, it offers numerous innovative opportunities. There are three SMEs and three enterprises within the project, as well as eight associate partners drawn from across the biomedical sector, who are fully aware of the vast potential of HPC in this domain. We shall work with them to advance the exploitation of HPC and will engage closely with medical professionals through our partner hospitals in order to establish modeling and simulation as an integral part of clinical decision making. Our CoE is thus user-driven, integrated, multidisciplinary, and distributed; presenting a vision that is in line with the Work Programme.
     

Recent Publications

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Towards blood flow in the virtual human: efficient self-coupling of HemeLB
Interface focus 11(1), 20190119 - () [10.1098/rsfs.2019.0119] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Contribution to a conference proceedings/Contribution to a book
Exascale potholes for HPC: Execution performance and variability analysis of the flagship application code HemeLB
Proceedings of 2020 IEEE/ACM International Workshop on HPC User Support Tools (HUST) and the Workshop on Programming and Performance Visualization Tools (ProTools)
Workshop on Programming and Performance Visualization Tools, ProTools '20, onlineonline, online, 12 Nov 2020 - 12 Nov 20202020-11-122020-11-12
IEEE 59-70 () [10.1109/HUSTProtools51951.2020.00014] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Modeling Patient-Specific Magnetic Drug Targeting Within the Intracranial Vasculature
Frontiers in physiology 9, 331 () [10.3389/fphys.2018.00331] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

All known publications ...
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 Record created 2016-11-18, last modified 2023-02-13



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