Journal Article

FZJ-2022-01558

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Brain simulation as a cloud service: The Virtual Brain on EBRAINS

Schirner, M. (Corresponding author) ; Domide, L. ; Perdikis, D. ; Triebkorn, P. ; Stefanovski, L. ; Pai, R. ; Prodan, P. ; Valean, B. ; Palmer, J. ; Langford, C. ; Blickensdörfer, A. ; van der Vlag, M.FZJ* ; Diaz-Pier, S.FZJ* ; Peyser, A.FZJ* ; Klijn, W.FZJ* ; Pleiter, D.FZJ* ; Nahm, A.FZJ* ; Schmid, O. ; Woodman, M. ; Zehl, L.FZJ* ; Fousek, J. ; Petkoski, S. ; Kusch, L. ; Hashemi, M. ; Marinazzo, D. ; Mangin, J.-F. ; Flöel, A. ; Akintoye, S. ; Stahl, B. C. ; Cepic, M. ; Johnson, E. ; Deco, G. ; McIntosh, A. R. ; Hilgetag, C. C. ; Morgan, M. ; Schuller, B.FZJ* ; Upton, A. ; McMurtrie, C. ; Dickscheid, T.FZJ* ; Bjaalie, J. G. ; Amunts, K.FZJ* ; Mersmann, J. ; Jirsa, V. ; Ritter, P.

2022
Academic Press Orlando, Fla.

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Please use a persistent id in citations: http://hdl.handle.net/2128/30916  doi:10.1016/j.neuroimage.2022.118973

Abstract: The Virtual Brain (TVB) is now available as open-source services on the cloud research platform EBRAINS (ebrains.eu). It offers software for constructing, simulating and analysing brain network models including the TVB simulator; magnetic resonance imaging (MRI) processing pipelines to extract structural and functional brain networks; combined simulation of large-scale brain networks with small-scale spiking networks; automatic conversion of user-specified model equations into fast simulation code; simulation-ready brain models of patients and healthy volunteers; Bayesian parameter optimization in epilepsy patient models; data and software for mouse brain simulation; and extensive educational material. TVB cloud services facilitate reproducible online collaboration and discovery of data assets, models, and software embedded in scalable and secure workflows, a precondition for research on large cohort data sets, better generalizability, and clinical translation.

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Contributing Institute(s):

1. Strukturelle und funktionelle Organisation des Gehirns (INM-1)
2. Jülich Supercomputing Center (JSC)

Research Program(s):

1. 5254 - Neuroscientific Data Analytics and AI (POF4-525) (POF4-525)
2. 5111 - Domain-Specific Simulation & Data Life Cycle Labs (SDLs) and Research Groups (POF4-511) (POF4-511)
3. 5112 - Cross-Domain Algorithms, Tools, Methods Labs (ATMLs) and Research Groups (POF4-511) (POF4-511)
4. 5121 - Supercomputing & Big Data Facilities (POF4-512) (POF4-512)
5. HBP SGA3 - Human Brain Project Specific Grant Agreement 3 (945539) (945539)
6. HBP SGA2 - Human Brain Project Specific Grant Agreement 2 (785907) (785907)
7. SLNS - SimLab Neuroscience (Helmholtz-SLNS) (Helmholtz-SLNS)

Appears in the scientific report 2022

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; ; ; ; Article Processing Charges ; BIOSIS Previews ; Biological Abstracts ; Clarivate Analytics Master Journal List ; Current Contents - Life Sciences ; DOAJ Seal ; Ebsco Academic Search ; Essential Science Indicators ; Fees ; IF >= 5 ; JCR ; Nationallizenz ; SCOPUS ; Science Citation Index Expanded ; Web of Science Core Collection

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